Test Results (New)

Three genomes were tested with MGEScan-LTR and MGEScan-nonLTR programs.

  • Test genome sequences:
  • Test Environment:
    chameleoncloud.org
  • Hardware Spec:
    • Intel Xeon E5-2670 v3 “Haswell” processors (each with 12 cores @ 2.3GHz)
    • 48 vCPUs
    • 128 GiB
  • Operating System:
    • Ubuntu 14.04 LTS

Performance nonLTR with MPI

_images/results.mpi.nonltr.png

Performance LTR with MPI

_images/results.mpi.ltr.png

ipynb file

D. melanogaster (dm3)

Evaluation

Elapsed time for MGEScan-nonLTR (dm3)
Elapsed Time Options
5 mins (318 secs) 12 MPI Processes
11 mins (610 secs) 8 MPI Processes
12 mins (684 secs) 4 MPI Processes
18 mins (1037 secs) 2 MPI Processes
Elapsed time for MGEScan-LTR (dm3)
Elapsed Time Options
18 mins (1081 secs) 6 MPI Processes
30 mins (1788 secs) 4 MPI Processes
28 mins (1685 secs) 2 MPI Processes
45 mins (2680 secs) 1 MPI Process