Test Results (New)

Page Contents

Three genomes were tested with MGEScan-LTR and MGEScan-nonLTR programs.

• Test genome sequences:

  • 4. melanogaster (dm3): fruitfly.org
  • 3. elegans: wormbase.org
  • 1. thaliana: nih.gov

• Test Environment:

  chameleoncloud.org

• Hardware Spec:

  • Intel Xeon E5-2670 v3 “Haswell” processors (each with 12 cores @ 2.3GHz)
  • 48 vCPUs
  • 128 GiB

• Operating System:

  • Ubuntu 14.04 LTS

Performance nonLTR with MPI

Performance LTR with MPI

ipynb file

D. melanogaster (dm3)

• results (gff3): https://github.com/MGEScan/evaluation/tree/accuracy-evaluation/results/dm3

Evaluation

Elapsed time for MGEScan-nonLTR (dm3)

Elapsed Time	Options
5 mins (318 secs)	12 MPI Processes
11 mins (610 secs)	8 MPI Processes
12 mins (684 secs)	4 MPI Processes
18 mins (1037 secs)	2 MPI Processes

Elapsed time for MGEScan-LTR (dm3)

Elapsed Time	Options
18 mins (1081 secs)	6 MPI Processes
30 mins (1788 secs)	4 MPI Processes
28 mins (1685 secs)	2 MPI Processes
45 mins (2680 secs)	1 MPI Process

C. elegans

• results (gff3): https://github.com/MGEScan/evaluation/tree/accuracy-evaluation/results/c_elegans

A. thaliana

• results (gff3): https://github.com/MGEScan/evaluation/tree/accuracy-evaluation/results/a_thaliana